Citing OmicShare Tools:

If you use OmicShare Tools, we hope you cite it in the paper, for example: XXXX analysis was performed using the OmicShare tools, a free online platform for data analysis (http://www.omicshare.com/tools).



Heatmap

A graphical representation of data matrix with colors.

30

12

Letter identification column chart

Multiple comparisons were used to analyze differences between groups, and the degree of difference was indicated by letters.

5

9

paired differential expression analysis

Find out differential expression genes via edgeR based on paired relationship

10

7

paired t test

This tool is used to estimate whether two groups have significant difference via t-test based on paired relationship.

5

5

Enrichment bar chart

Enrichment analysis results draw bar plot .

10

27

box_mul_sig

T-test and rank sum test were performed between multiple groups of samples, and a box plot was drawn. Significant differences between groups marked wi

5

21

box_two_sig

T test and rank sum test were performed between the two groups of samples, and a box plot was drawn. Significant differences were marked between the

5

13

tSNE

Reduce multiple samples to two-dimensional plane via the nonlinear reduction model. Not available for sing-cell data for the moment.

5

12

Broken axis histogram

Draw a Broken axis histogram chart with tabular data with a table head

5

10

Significance marker difference analysis(Multiple g

T-test and rank sum test were performed between multiple groups of samples, and significant differences between groups marked with significant differe

5

20

Significance marker difference analysis(Two groups

T test and rank sum test were performed between the two groups of samples, and significant differences were marked between the groups.

5

10

ternary_plot

Draw a ternary graph with tabular data with a header.

5

16

plantTFdb_annotation

align nucleic acid or protein sequence to plantTFdb to predicte TF families

1200

14

CAZy annotation

Sequences annotation for CAZy database.

1200

8

Pfam annotation

Sequences annotation for Pfam database.

1500

13

eggNOG annotation

Sequences annotation for eggNOG database

1200

6

KOG annotation

Sequences annotation for KOG database

1200

11

COG annotation

Sequences annotation for COG database

1800

13

CARD annotation

Resistence gene annotation in CARD

1200

4

VFDB annotation

annation for virulence factors in VFDB

1200

6

ARDB annotation

annotation for bacteria resistance protein in ARDB

1500

5

NR Annotion

align the query sequences to the NR database.

1800

12

KEGG Annotation

align the query sequences to the KEGG database.

1800

43

GO Annotation

align the query sequences to the GO database.

1800

47

PHI annotation

Sequences annotation for PHI database.

1200

11

AnimalTFDB annotation

align nucleic acid or protein sequences to animalTFBD to predicte TF families

1200

3

Swiss-Prot annotation

align the query sequences to the Swiss-Prot protein database to obtain functional annotations

1800

11

UpSet Venn

Shows all possible logical relations between different data sets

10

54

pcoa

Using the linear model to reduce the sample distance dimension display

15

63

Pathway Enrichment Analysis

Pathway enrichment analysis in given gene sets comparing to the genome background.

30

197

rank_sum_test

this tool determine if two groups of data are significantly different from each other

5

24

circos

Draw a circus plot to display relationship between sample and taxa

5

101

GO enrichment analysis

Analyze GO terms that significantly enriched in a given gene set comparing to the genome background.

30

233

t-test

this tool determine if two groups of data are significantly different from each other

5

77

violin2

Using several table datas to draw a grouped violin diagram

10

49

Quadrant plot

correlation analysis between transcriptome and proteome

5

43

ICA

Inter group

10

117

ICA

within groups

10

107

Violin plot

Visualizing data with a Violin plot

10

91

cca/rda

cca

10

71

roc

ROC curve, is a graphical plot that illustrates the diagnostic ability of a binary classifier system(e.g. biomarker)

5

56

nmds

Using the non-linear model to reduce the sample distance dimension display

5

104

pcoa

Using the linear model to reduce the sample distance dimension display

5

146

Differential metabolites analysis

Differential metabolites analysis tool is used to screen out differential metabolites between two groups of samples.

5

195

fq2fa

Covert fastq files to fasta files

2

49

OSGO

Plotting GO (gene ontology) annotations (the second level) in three GO ontologies from one or more groups of data.

5

203

Decoding SAM flag

Identify the properties of a read based on its SAM flag value or obtain a SAM flag value based on the reads properties.

0

33

Pie chart

Demonstrate file data in a pie chart.

2

124

Three-dimension scatter plot

Demonstrate file data in a three-dimension scatter plot.

2

86

Linear Regression plot

Plotting the relationship between a scalar dependent variable y and one explanatory variable x.

2

101

Weighted Interaction Network

Constructing weighted molecular interaction networks.

5

150

Differential Expression Analysis

Find out differentially expressed genes between two groups of data.

10

329

Three-dimension PCA

Convert linearly massive variables into several important variables and draw a three-dimension score plot.

5

178

Senior Scatter Plot

Demonstrate file data in a scatter plot with auxiliary lines and correlation coefficient.

5

129

COG/KOG Histogram

Draw a histogram using COG/KOG IDs or COG/KOG codes of genes.

5

145

Senior Bubble plot

Demonstrate file data in a senior bubble plot.

15

477

SVG Format Conversion

Convert SVG images into other formats.

2

92

Krona chart

Krona allows hierarchical data to be explored with zoomable pie charts.

2

56

MA plot

Displaying significant difference between two groups of data.

2

117

Volcano plot

Displaying significant difference between two groups of data.

5

412

Directed Interaction Network

Constructing directed molecular interaction networks.

5

157

GO enrichment analysis

Analyze GO terms that significantly enriched in a given gene set comparing to the genome background.

15

738

Pathway Enrichment Analysis

Pathway enrichment analysis in given gene sets comparing to the genome background.

15

748

Trend Analysis

Cluster genes with similar expression patterns

15

359

Venn

Shows all possible logical relations between different data sets

10

649

Heatmap

A graphical representation of data matrix with colors.

15

1037

Bubble plot

Visualizing data with a bubble plot.

5

177

Boxplot

Visualizing data with a boxplot.

3

216

Area graph

Visualizing data with an area graph

3

47

Frequency Histogram

Demonstrate the frequency distribution of file data in a frequency histogram.

2

81

Histogram

Demonstrate file data in a histogram.

2

121

Line chart

Demonstrate file data in a line chart.

2

105

Scatter plot

Demonstrate file data in a scatter plot.

5

120

Hierarchical Cluster Analysis (HCA)

Cluster data with similar properties.

5

261

Two-dimension PCA

Convert linearly massive variables into several important variables and draw a two-dimension score plot.

10

453

MUSCLE-Multiple Sequences Alignment

Multiple Sequences Alignment with Muscle program

2

78

BLAST-Two Sequences Alignment

Local alignment between two sequences to measure their similarity

5

104

CDS2protein

Translating CDS to protein according to the Standard Code (transl_table=1) or the Bacterial, Archaeal and Plant Plastid Code (transl_table=11)

2

62

DNA/RNA Conversion

Conversion between DNA and RNA

2

47

Sequence Interception

Cut out a designated section of sequence.

2

62

Sequence Length Filtering

Filter sequences with specific length.

2

55

Sequence Length Calculator

Calculate sequence length.

2

61

Sequence Format Painter

An extremely versatile application for sequence reformatting.

2

45

Data filter

Pick out data of interest from the input table

5

208

Table transposition

Transposing the row and column in a table

2

108

Multiple tables merging

Merging more than two tables according to the merging type and default value.

2

141

Two tables merging

Merging two tables according to the merging type and default value.

2

219